Create a SingleCellExperiment from a list of delayed matrices

Source: R/getExpListFromFragments.R

Create a SingleCellExperiment from a list of delayed matrices using AmalgamatedArray.

getSCEFromH5List(h5.res.list, grs)

Arguments

h5.res.list

A list containing delayed matrices with HDF5 backends that will be combined using AmalgamatedArray into a SingleCellExperiment. List item names should be the sample name for the delayed matrix.

grs

GRange object to be used for the rowRanges of the resulting SingleCellExperiment

Value

A SingleCellExperiment

Author

Natalie Fox

Examples

# Mock H5 matrices
m1 <- Matrix::Matrix(1:10, ncol=2)
m2 <- Matrix::Matrix(1:10, ncol=2)
h5.list <- list(S1 = m1, S2 = m2)
grs <- GenomicRanges::GRanges("chr1", IRanges::IRanges(1:5, width=1))

sce <- getSCEFromH5List(h5.list, grs)