Package index • arbalistIO

All functions
`GRCh38.gene.grs`	Gene features for GRCh38
`GRCh38.seq.lengths`	Reference sequence lengths for GRCh38
`GRCh38.tss.grs`	TSS features for GRCh38
`GRCm38.gene.grs`	Gene features for GRCh38
`GRCm38.seq.lengths`	Reference sequence lengths for GRCm38
`GRCm38.tss.grs`	TSS features for GRCh38
`createArbalistMAE()`	Import a single cell ATAC-seq MultiAssayExperiment
`createArbalistMAEFromCellrangerDirs()`	Import a single cell ATAC-seq MultiAssayExperiment
`createRNASCE()`	Import gene expression results from multiome Cell Ranger results
`extractGenomeRefFilenameFromFragmentFile()`	Retrieves genome reference file name
`filterDuplicateFeatures()`	Filter duplicate features
`getExpListFromFragments()`	Create a list of single cell experiments
`getSCEFromH5List()`	Create a SingleCellExperiment from a list of delayed matrices
`mockCellRangerH5()`	Create a mock Cell Ranger h5 file
`mockFragmentFile()`	Create a mock fragment file
`saveRegionMatrix()`	Save a region count matrix
`saveTileMatrix()`	Save a tile count matrix

Reference